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1

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

Karmin, Monika, Saag, Lauri, Vicente, Mário, Sayres, Melissa A. Wilson, Järve, Mari, Talas, Ulvi Gerst, Rootsi, Siiri, Ilumäe, Anne-Mai, Mägi, Reedik, Mitt, Mario, Pagani, Luca, Puurand, Tarmo, Faltys

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 12.93 MB

english, 2015

2

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

Speliotes, Elizabeth K, Willer, Cristen J, Berndt, Sonja I, Monda, Keri L, Thorleifsson, Gudmar, Jackson, Anne U, Allen, Hana Lango, Lindgren, Cecilia M, Luan, Jian'an, Mägi, Reedik

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

3

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Heid, Iris M, Jackson, Anne U, Randall, Joshua C, Winkler, Thomas W, Qi, Lu, Steinthorsdottir, Valgerdur, Thorleifsson, Gudmar, Zillikens, M Carola, Speliotes, Elizabeth K, Mägi, Reedik

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 1.17 MB

english, 2010

4

Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia

Mait Metspalu, Irene Gallego Romero, Bayazit Yunusbayev, Gyaneshwer Chaubey, Chandana Basu Mallick, Georgi Hudjashov, Mari Nelis, Reedik Mägi, Ene Metspalu, Maido Remm, Ramasamy Pitchappan, Lalji Sing

Journal:

The American Journal of Human Genetics

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

5

Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta

Metsalu, Tauno, Viltrop, Triin, Tiirats, Airi, Rajashekar, Balaji, Reimann, Ene, Kõks, Sulev, Rull, Kristiina, Milani, Lili, Acharya, Ganesh, Basnet, Purusotam, Vilo, Jaak, Mägi, Reedik, Metspalu, And

Journal:

Year:

2014

Language:

english

File:

PDF, 492 KB

english, 2014

6

The impact of low-frequency and rare variants on lipid levels

Surakka, Ida, Horikoshi, Momoko, Mägi, Reedik, Sarin, Antti-Pekka, Mahajan, Anubha, Lagou, Vasiliki, Marullo, Letizia, Ferreira, Teresa, Miraglio, Benjamin, Timonen, Sanna, Kettunen, Johannes, Pirinen

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

7

Thiopurine S-methyltransferase (TPMT) pharmacogenetics: three new mutations and haplotype analysis in the Estonian population

Tamm, Riin, Oselin, Kersti, Kallassalu, Kristi, Magi, Reedik, Anier, Kaili, Remm, Maido, Metspalu, Andres

Journal:

Clinical Chemistry and Laboratory Medicine

Year:

2008

Language:

english

File:

PDF, 102 KB

english, 2008

8

Genetic Structure of Europeans: A View from the North–East

Nelis, Mari, Esko, Tõnu, Mägi, Reedik, Zimprich, Fritz, Zimprich, Alexander, Toncheva, Draga, Karachanak, Sena, Piskáčková, Tereza, Balaščák, Ivan, Peltonen, Leena, Jakkula, Eveliina, Rehnström, Karol

Journal:

Year:

2009

Language:

english

File:

PDF, 516 KB

english, 2009

9

Parents of early‐maturing girls die younger

Hõrak, Peeter, Valge, Markus, Fischer, Krista, Mägi, Reedik, Kaart, Tanel

Journal:

Evolutionary Applications

Year:

2019

Language:

english

File:

PDF, 784 KB

english, 2019

10

Analytical strategies to include the X‐chromosome in variance heterogeneity analyses: Evidence for trait‐specific polygenic variance structure

Deng, Wei Q., Mao, Shihong, Kalnapenkis, Anette, Esko, Tõnu, Mägi, Reedik, Paré, Guillaume, Sun, Lei

Journal:

Genetic Epidemiology

Year:

2019

Language:

english

File:

PDF, 1.73 MB

english, 2019

11

Meta-analysis of sex-specific genome-wide association studies

Reedik Magi, Cecilia M. Lindgren, Andrew P. Morris

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 212 KB

english, 2010

12

Regression and data mining methods for analyses of multiple rare variants in the Genetic Analysis Workshop 17 mini-exome data

Joan E. Bailey-Wilson, Jennifer S. Brennan, Shelley B. Bull, Robert Culverhouse, Yoonhee Kim, Yuan Jiang, Jeesun Jung, Qing Li, Claudia Lamina, Ying Liu, Reedik Mägi, Yue S. Niu, Claire L. Simpson, Li

Journal:

Genetic Epidemiology

Year:

2011

Language:

english

File:

PDF, 124 KB

english, 2011

13

Assessing the impact of missing genotype data in rare variant association analysis

Reedik Mägi, Ashish Kumar, Andrew P Morris

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 356 KB

english, 2011

14

Molecular diagnosis of Down syndrome using quantitative APEX-2 microarrays

Eneli Oitmaa, Maire Peters, Kadri Vaidla, Reidar Andreson, Reedik Mägi, Georgi Slavin, Agne Velthut, Neeme Tõnisson, Tiia Reimand, Maido Remm, Marion Schneider, Katrin Õunap, Andres Salumets, Andres M

Journal:

Prenatal Diagnosis

Year:

2010

Language:

english

File:

PDF, 237 KB

english, 2010

15

Haplotypes in the human Foxo1a and Foxo3a genes; impact on disease and mortality at old age

Kuningas, Maris, Mägi, Reedik, Westendorp, Rudi G J, Slagboom, P Eline, Remm, Maido, van Heemst, Diana

Journal:

European Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 148 KB

english, 2007

16

Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia

Mait Metspalu, Irene Gallego Romero, Bayazit Yunusbayev, Gyaneshwer Chaubey, Chandana Basu Mallick, Georgi Hudjashov, Mari Nelis, Reedik Mägi, Ene Metspalu, Maido Remm, Ramasamy Pitchappan, Lalji Sing

Journal:

The American Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 33 KB

english, 2012

17

GWAMA: software for genome-wide association meta-analysis

Reedik Mägi, Andrew P Morris

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 488 KB

english, 2010

18

Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation

Reedik Mägi, Arne Pfeufer, Mari Nelis, Alexandre Montpetit, Andres Metspalu, Maido Remm

Journal:

Year:

2007

Language:

english

File:

PDF, 675 KB

english, 2007

19

Genome-Wide Association Analysis of Imputed Rare Variants: Application to Seven Common Complex Diseases

Reedik Mägi, Jennifer L. Asimit, Aaron G. Day-Williams, Eleftheria Zeggini, Andrew P. Morris

Journal:

Genetic Epidemiology

Year:

2012

Language:

english

File:

PDF, 936 KB

english, 2012

20

A parallel SNP array study of genomic aberrations associated with mental retardation in patients and general population in Estonia

Katrin Männik, Sven Parkel, Priit Palta, Olga Žilina, Helen Puusepp, Tõnu Esko, Reedik Mägi, Margit Nõukas, Andres Veidenberg, Mari Nelis, Andres Metspalu, Maido Remm, Katrin Õunap, Ants Kurg

Journal:

European Journal of Medical Genetics

Year:

2011

Language:

english

File:

PDF, 554 KB

english, 2011

21

Linkage Disequilibrium Patterns and tagSNP Transferability among European Populations

Jakob C. Mueller, Elin Lõhmussaar, Reedik Mägi, Maido Remm, Thomas Bettecken, Peter Lichtner, Saskia Biskup, Thomas Illig, Arne Pfeufer, Jan Luedemann, Stefan Schreiber, Peter Pramstaller, Irene Pichl

Journal:

The American Journal of Human Genetics

Year:

2005

Language:

english

File:

PDF, 6.36 MB

english, 2005

22

FTO genotype is associated with phenotypic variability of body mass index

Yang, Jian, Loos, Ruth J. F., Powell, Joseph E., Medland, Sarah E., Speliotes, Elizabeth K., Chasman, Daniel I., Rose, Lynda M., Thorleifsson, Gudmar, Steinthorsdottir, Valgerdur, Mägi, Reedik, Waite,

Journal:

Year:

2012

Language:

english

File:

PDF, 308 KB

english, 2012

23

Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture

Berndt, Sonja I, Gustafsson, Stefan, Mägi, Reedik, Ganna, Andrea, Wheeler, Eleanor, Feitosa, Mary F, Justice, Anne E, Monda, Keri L, Croteau-Chonka, Damien C, Day, Felix R, Esko, Tõnu, Fall, Tove, Fer

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

24

Coexpression Network Analysis in Abdominal and Gluteal Adipose Tissue Reveals Regulatory Genetic Loci for Metabolic Syndrome and Related Phenotypes

Min, Josine L., Nicholson, George, Halgrimsdottir, Ingileif, Almstrup, Kristian, Petri, Andreas, Barrett, Amy, Travers, Mary, Rayner, Nigel W., Mägi, Reedik, Pettersson, Fredrik H., Broxholme, John, N

Journal:

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

25

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme

Journal:

Year:

2014

Language:

english

File:

PDF, 391 KB

english, 2014

26

Quality control and conduct of genome-wide association meta-analyses

Winkler, Thomas W, Day, Felix R, Croteau-Chonka, Damien C, Wood, Andrew R, Locke, Adam E, Mägi, Reedik, Ferreira, Teresa, Fall, Tove, Graff, Mariaelisa, Justice, Anne E, Luan, Jian'an, Gustafsson, Ste

Journal:

Nature Protocols

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

27

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Heid, Iris M, Jackson, Anne U, Randall, Joshua C, Winkler, Thomas W, Qi, Lu, Steinthorsdottir, Valgerdur, Thorleifsson, Gudmar, Zillikens, M Carola, Speliotes, Elizabeth K, Mägi, Reedik, Workalemahu,

Journal:

Nature Genetics

Year:

2011

File:

PDF, 85 KB

2011

28

Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways

Scott, Robert A, Lagou, Vasiliki, Welch, Ryan P, Wheeler, Eleanor, Montasser, May E, Luan, Jian'an, Mägi, Reedik, Strawbridge, Rona J, Rehnberg, Emil, Gustafsson, Stefan, Kanoni, Stavroula, Rasmussen-

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 771 KB

english, 2012

29

New genetic loci link adipose and insulin biology to body fat distribution

Shungin, Dmitry, Winkler, Thomas W., Croteau-Chonka, Damien C., Ferreira, Teresa, Locke, Adam E., Mägi, Reedik, Strawbridge, Rona J., Pers, Tune H., Fischer, Krista, Justice, Anne E., Workalemahu, Tse

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

30

Dominance Genetic Variation Contributes Little to the Missing Heritability for Human Complex Traits

Zhu, Zhihong, Bakshi, Andrew, Vinkhuyzen, Anna A.E., Hemani, Gibran, Lee, Sang Hong, Nolte, Ilja M., van Vliet-Ostaptchouk, Jana V., Snieder, Harold, Esko, Tonu, Milani, Lili, Mägi, Reedik, Metspalu,

Journal:

The American Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 968 KB

english, 2015

31

Age- and Sex-Specific Causal Effects of Adiposity on Cardiovascular Risk Factors

Fall, Tove, Hägg, Sara, Ploner, Alexander, Mägi, Reedik, Fischer, Krista, Draisma, Harmen H.M., Sarin, Antti-Pekka, Benyamin, Beben, Ladenvall, Claes, Åkerlund, Mikael, Kals, Mart, Esko, Tõnu, Nelson,

Journal:

Year:

2015

Language:

english

File:

PDF, 698 KB

english, 2015

32

Copy Number Variations and Cognitive Phenotypes in Unselected Populations

Männik, Katrin, Mägi, Reedik, Macé, Aurélien, Cole, Ben, Guyatt, Anna L., Shihab, Hashem A., Maillard, Anne M., Alavere, Helene, Kolk, Anneli, Reigo, Anu, Mihailov, Evelin, Leitsalu, Liis, Ferreira, A

Journal:

JAMA The Journal of the American Medical Association

Year:

2015

Language:

english

File:

PDF, 356 KB

english, 2015

33

Biomarker Profiling by Nuclear Magnetic Resonance Spectroscopy for the Prediction of All-Cause Mortality: An Observational Study of 17,345 Persons

Fischer, Krista, Kettunen, Johannes, Würtz, Peter, Haller, Toomas, Havulinna, Aki S., Kangas, Antti J., Soininen, Pasi, Esko, Tõnu, Tammesoo, Mari-Liis, Mägi, Reedik, Smit, Steven, Palotie, Aarno, Rip

Journal:

Year:

2014

Language:

english

File:

PDF, 1.38 MB

english, 2014

34

An Evaluation of the Performance of Tag SNPs Derived from HapMap in a Caucasian Population

Montpetit, Alexandre, Nelis, Mari, Laflamme, Philippe, Magi, Reedik, Ke, Xiayi, Remm, Maido, Cardon, Lon, Hudson, Thomas J., Metspalu, Andres

Journal:

Year:

2006

Language:

english

File:

PDF, 468 KB

english, 2006

35

Sex-stratified Genome-wide Association Studies Including 270,000 Individuals Show Sexual Dimorphism in Genetic Loci for Anthropometric Traits

Randall, Joshua C., Winkler, Thomas W., Kutalik, Zoltán, Berndt, Sonja I., Jackson, Anne U., Monda, Keri L., Kilpeläinen, Tuomas O., Esko, Tõnu, Mägi, Reedik, Li, Shengxu, Workalemahu, Tsegaselassie,

Journal:

Year:

2013

File:

PDF, 2.94 MB

2013

36

A Central Role for GRB10 in Regulation of Islet Function in Man

Prokopenko, Inga, Poon, Wenny, Mägi, Reedik, Prasad B, Rashmi, Salehi, S. Albert, Almgren, Peter, Osmark, Peter, Bouatia-Naji, Nabila, Wierup, Nils, Fall, Tove, Stančáková, Alena, Barker, Adam, Lagou,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.08 MB

english, 2014

37

Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue

Parts, Leopold, Hedman, Åsa K., Keildson, Sarah, Knights, Andrew J., Abreu-Goodger, Cei, van de Bunt, Martijn, Guerra-Assunção, José Afonso, Bartonicek, Nenad, van Dongen, Stijn, Mägi, Reedik, Nisbet,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.00 MB

english, 2012

38

Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population

Lim, Elaine T., Würtz, Peter, Havulinna, Aki S., Palta, Priit, Tukiainen, Taru, Rehnström, Karola, Esko, Tõnu, Mägi, Reedik, Inouye, Michael, Lappalainen, Tuuli, Chan, Yingleong, Salem, Rany M., Lek,

Journal:

Year:

2014

Language:

english

File:

PDF, 773 KB

english, 2014

39

The Role of Adiposity in Cardiometabolic Traits: A Mendelian Randomization Analysis

Fall, Tove, Hägg, Sara, Mägi, Reedik, Ploner, Alexander, Fischer, Krista, Horikoshi, Momoko, Sarin, Antti-Pekka, Thorleifsson, Gudmar, Ladenvall, Claes, Kals, Mart, Kuningas, Maris, Draisma, Harmen H.

Journal:

Year:

2013

File:

PDF, 608 KB

2013

40

Using Genetic Variants to Assess the Relationship Between Circulating Lipids and Type 2 Diabetes

Fall, Tove, Xie, Weijia, Poon, Wenny, Yaghootkar, Hanieh, Mägi, Reedik, Knowles, Joshua W., Lyssenko, Valeriya, Weedon, Michael, Frayling, Timothy M., Ingelsson, Erik

Journal:

Year:

2015

Language:

english

File:

PDF, 815 KB

english, 2015

41

Genome-wide genetic homogeneity between sexes and populations for human height and body mass index

Yang, Jian, Bakshi, Andrew, Zhu, Zhihong, Hemani, Gibran, Vinkhuyzen, Anna A.E., Nolte, Ilja M., van Vliet-Ostaptchouk, Jana V., Snieder, Harold, Esko, Tonu, Milani, Lili, Mägi, Reedik, Metspalu, Andr

Journal:

Human Molecular Genetics

Year:

2015

Language:

english

File:

PDF, 332 KB

english, 2015

42

Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

Gaulton, Kyle J, Ferreira, Teresa, Lee, Yeji, Raimondo, Anne, Mägi, Reedik, Reschen, Michael E, Mahajan, Anubha, Locke, Adam, William Rayner, N, Robertson, Neil, Scott, Robert A, Prokopenko, Inga, Sco

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

43

Imprinted genes and imprinting control regions show predominant intermediate methylation in adult somatic tissues

Pervjakova, Natalia, Kasela, Silva, Morris, Andrew P, Kals, Mart, Metspalu, Andres, Lindgren, Cecilia M, Salumets, Andres, Mägi, Reedik

Journal:

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

44

Copy Number Variations and Cognitive Phenotypes in Unselected Populations

Männik, Katrin, Mägi, Reedik, Macé, Aurélien, Cole, Ben, Guyatt, Anna L., Shihab, Hashem A., Maillard, Anne M., Alavere, Helene, Kolk, Anneli, Reigo, Anu, Mihailov, Evelin, Leitsalu, Liis, Ferreira, A

Journal:

Obstetric and Gynecologic Survey

Year:

2015

Language:

english

File:

PDF, 80 KB

english, 2015

45

Genome-wide association study of the modified Stumvoll Insulin Sensitivity Index identifies BCL2 and FAM19A2 as novel insulin sensitivity loci

Walford, Geoffrey A., Gustafsson, Stefan, Rybin, Denis, Stančáková, Alena, Chen, Han, Liu, Ching-Ti, Hong, Jaeyoung, Jensen, Richard A., Rice, Ken, Morris, Andrew P., Mägi, Reedik, Tönjes, Anke, Proko

Journal:

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016

46

Personalized risk prediction for type 2 diabetes: the potential of genetic risk scores

Läll, Kristi, Mägi, Reedik, Morris, Andrew, Metspalu, Andres, Fischer, Krista

Journal:

Genetics in Medicine

Year:

2016

Language:

english

File:

PDF, 2.66 MB

english, 2016

47

A Whole-Blood Transcriptome Meta-Analysis Identifies Gene Expression Signatures of Cigarette Smoking

Huan, Tianxiao, Joehanes, Roby, Schurmann, Claudia, Schramm, Katharina, Pilling, Luke C., Peters, Marjolein J., Mägi, Reedik, DeMeo, Dawn, O'Connor, George T, Ferrucci, Luigi, Teumer, Alexander, Homut

Journal:

Human Molecular Genetics

Year:

2016

Language:

english

File:

PDF, 447 KB

english, 2016

48

Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: a meta-analysis of three genome-wide association studies

Tamm, Riin, Mägi, Reedik, Tremmel, Roman, Winter, Stefan, Mihailov, Evelin, Smid, Alenka, Möricke, Anja, Klein, Kathrin, Schrappe, Martin, Stanulla, Martin, Houlston, Richard, Weinshilboum, Richard, M

Journal:

Clinical Pharmacology & Therapeutics

Year:

2016

Language:

english

File:

PDF, 4.44 MB

english, 2016

49

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - THE WHOLE GENOME TAGSNP SELECTION AND TRANSFERABILITY AMONG HAPMAP POPULATIONS

MÄGI, REEDIK, KAPLINSKI, LAURIS, REMM, MAIDO

Language:

english

File:

PDF, 500 KB

english

50

SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes

Mägi, Reedik, Suleimanov, Yury V., Clarke, Geraldine M., Kaakinen, Marika, Fischer, Krista, Prokopenko, Inga, Morris, Andrew P.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 880 KB

english, 2017